HL_8EWC_045

3D structure

PDB id

8EWC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.45 Å

Loop

Sequence

GGUAC

Length

5 nucleotides

Bulged bases

8EWC|1|A1|G|2111

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EWC_045 not in the Motif Atlas

Homologous match to HL_5TBW_045

Geometric discrepancy: 0.1098

The information below is about HL_5TBW_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_55195.2

Basepair signature

cWW-F

Number of instances in this motif group

6

Unit IDs

8EWC|1|A1|G|2110
8EWC|1|A1|G|2111
8EWC|1|A1|U|2112
8EWC|1|A1|A|2113
8EWC|1|A1|C|2114

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AR

60S ribosomal protein L19-A

Chain AW

RPL24A isoform 1

Chain B5

Small subunit ribosomal RNA; SSU rRNA