HL_8EWC_049
3D structure
- PDB id
- 8EWC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.45 Å
Loop
- Sequence
- GUA(A2M)CUAUGAC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8EWC_049 not in the Motif Atlas
- Homologous match to HL_5TBW_049
- Geometric discrepancy: 0.2113
- The information below is about HL_5TBW_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_84702.1
- Basepair signature
- cWW-F-F-tHW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
8EWC|1|A1|G|2253
8EWC|1|A1|U|2254
8EWC|1|A1|A|2255
8EWC|1|A1|A2M|2256
8EWC|1|A1|C|2257
8EWC|1|A1|U|2258
8EWC|1|A1|A|2259
8EWC|1|A1|U|2260
8EWC|1|A1|G|2261
8EWC|1|A1|A|2262
8EWC|1|A1|C|2263
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain B5
- Small subunit ribosomal RNA; SSU rRNA
- Chain Be
- 40S ribosomal protein S30-A
- Chain EC
- internal ribosome entry site (IRES)
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