HL_8EWC_070

3D structure

PDB id

8EWC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.45 Å

Loop

Sequence

CGGAAAGG

Length

8 nucleotides

Bulged bases

8EWC|1|A1|A|3243, 8EWC|1|A1|A|3244

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EWC_070 not in the Motif Atlas

Homologous match to HL_5TBW_069

Geometric discrepancy: 0.095

The information below is about HL_5TBW_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_24596.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

7

Unit IDs

8EWC|1|A1|C|3240
8EWC|1|A1|G|3241
8EWC|1|A1|G|3242
8EWC|1|A1|A|3243
8EWC|1|A1|A|3244
8EWC|1|A1|A|3245
8EWC|1|A1|G|3246
8EWC|1|A1|G|3247

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AB

60S ribosomal protein L3

Chain AO

60S ribosomal protein L16-A