HL_8EWC_096

3D structure

PDB id

8EWC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.45 Å

Loop

Sequence

CGUAUUG

Length

7 nucleotides

Bulged bases

8EWC|1|B5|U|779, 8EWC|1|B5|U|781, 8EWC|1|B5|U|782

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EWC_096 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.354

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

8EWC|1|B5|C|777
8EWC|1|B5|G|778
8EWC|1|B5|U|779
8EWC|1|B5|A|780
8EWC|1|B5|U|781
8EWC|1|B5|U|782
8EWC|1|B5|G|783

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BE

40S ribosomal protein S4-A

Chain BY

40S ribosomal protein S24-A