HL_8EWC_104
3D structure
- PDB id
- 8EWC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.45 Å
Loop
- Sequence
- GAC(XSX)CAACAC
- Length
- 10 nucleotides
- Bulged bases
- 8EWC|1|B5|A|1196
- QA status
- Modified nucleotides: XSX
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8EWC_104 not in the Motif Atlas
- Homologous match to HL_8C3A_217
- Geometric discrepancy: 0.1531
- The information below is about HL_8C3A_217
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50779.2
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8EWC|1|B5|G|1188
8EWC|1|B5|A|1189
8EWC|1|B5|C|1190
8EWC|1|B5|XSX|1191
8EWC|1|B5|C|1192
8EWC|1|B5|A|1193
8EWC|1|B5|A|1194
8EWC|1|B5|C|1195
8EWC|1|B5|A|1196
8EWC|1|B5|C|1197
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain BQ
- 40S ribosomal protein S16-A
- Chain BU
- RPS20 isoform 1
- Chain Bd
- RPS29A isoform 1
- Chain Bf
- Ubiquitin-40S ribosomal protein S31
- Chain EC
- internal ribosome entry site (IRES)
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