HL_8EWC_115

3D structure

PDB id

8EWC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.45 Å

Loop

Sequence

UCGAAAACUCUCCGAACACGG

Length

21 nucleotides

Bulged bases

8EWC|1|EC|A|6792, 8EWC|1|EC|C|6794, 8EWC|1|EC|U|6795

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EWC_115 not in the Motif Atlas

Geometric match to HL_5TBW_022

Geometric discrepancy: 0.311

The information below is about HL_5TBW_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

8EWC|1|EC|U|6787
8EWC|1|EC|C|6788
8EWC|1|EC|G|6789
8EWC|1|EC|A|6790
8EWC|1|EC|A|6791
8EWC|1|EC|A|6792
8EWC|1|EC|A|6793
8EWC|1|EC|C|6794
8EWC|1|EC|U|6795
8EWC|1|EC|C|6796
8EWC|1|EC|U|6797
8EWC|1|EC|C|6798
8EWC|1|EC|C|6799
8EWC|1|EC|G|6800
8EWC|1|EC|A|6801
8EWC|1|EC|A|6802
8EWC|1|EC|C|6803
8EWC|1|EC|A|6804
8EWC|1|EC|C|6805
8EWC|1|EC|G|6808
8EWC|1|EC|G|6809

Current chains

Chain EC

internal ribosome entry site (IRES)

Nearby chains

Chain AJ

RPL11A isoform 1

Chain Ao

60S ribosomal protein L42-A