HL_8EWC_118
3D structure
- PDB id
- 8EWC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.45 Å
Loop
- Sequence
- CACUUUGGGCAAAGUAG
- Length
- 17 nucleotides
- Bulged bases
- 8EWC|1|EC|A|6914
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8EWC_118 not in the Motif Atlas
- Geometric match to HL_8C3A_022
- Geometric discrepancy: 0.3274
- The information below is about HL_8C3A_022
- Detailed Annotation
- Externally structured
- Broad Annotation
- Externally structured
- Motif group
- HL_96426.1
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 4
Unit IDs
8EWC|1|EC|C|6899
8EWC|1|EC|A|6900
8EWC|1|EC|C|6901
8EWC|1|EC|U|6902
8EWC|1|EC|U|6903
8EWC|1|EC|U|6904
8EWC|1|EC|G|6905
8EWC|1|EC|G|6906
8EWC|1|EC|G|6907
8EWC|1|EC|C|6908
8EWC|1|EC|A|6909
8EWC|1|EC|A|6910
8EWC|1|EC|A|6911
8EWC|1|EC|G|6912
8EWC|1|EC|U|6913
8EWC|1|EC|A|6914
8EWC|1|EC|G|6915
Current chains
- Chain EC
- internal ribosome entry site (IRES)
Nearby chains
- Chain A1
- Large subunit ribosomal RNA; LSU rRNA
- Chain B5
- Small subunit ribosomal RNA; SSU rRNA
- Chain BD
- RPS3 isoform 1
- Chain BP
- RPS15 isoform 1
- Chain BX
- 40S ribosomal protein S23-A
- Chain Bf
- Ubiquitin-40S ribosomal protein S31
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