3D structure

PDB id
8EYQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
30S_delta_ksgA_h44_inactive_conformation
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
CGCGAG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8EYQ_028 not in the Motif Atlas
Homologous match to HL_5J7L_027
Geometric discrepancy: 0.296
The information below is about HL_5J7L_027
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.8
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
352

Unit IDs

8EYQ|1|A|C|1265
8EYQ|1|A|G|1266
8EYQ|1|A|C|1267
8EYQ|1|A|G|1268
8EYQ|1|A|A|1269
8EYQ|1|A|G|1270

Current chains

Chain A
16S_rRNA

Nearby chains

Chain M
30S ribosomal protein S13
Chain S
30S ribosomal protein S19

Coloring options:


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