HL_8FC2_179

3D structure

PDB id

8FC2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and azithromycin at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

GCUUUGC

Length

7 nucleotides

Bulged bases

8FC2|1|2a|U|202, 8FC2|1|2a|U|204

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FC2_179 not in the Motif Atlas

Homologous match to HL_6CZR_076

Geometric discrepancy: 0.2988

The information below is about HL_6CZR_076

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34168.3

Basepair signature

cWW-cWW-F

Number of instances in this motif group

11

Unit IDs

8FC2|1|2a|G|200
8FC2|1|2a|C|201
8FC2|1|2a|U|202
8FC2|1|2a|U|203
8FC2|1|2a|U|204
8FC2|1|2a|G|216
8FC2|1|2a|C|217

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains