3D structure

PDB id
8FC3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and telithromycin at 2.60A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.6 Å

Loop

Sequence
CAGCC(G7M)
Length
6 nucleotides
Bulged bases
None detected
QA status
Modified nucleotides: G7M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8FC3_212 not in the Motif Atlas
Homologous match to HL_4LFB_033
Geometric discrepancy: 0.114
The information below is about HL_4LFB_033
Detailed Annotation
GNRA variation
Broad Annotation
GNRA variation
Motif group
HL_37824.7
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
349

Unit IDs

8FC3|1|2a|C|522
8FC3|1|2a|A|523
8FC3|1|2a|G|524
8FC3|1|2a|C|525
8FC3|1|2a|C|526
8FC3|1|2a|G7M|527

Current chains

Chain 2a
16S Ribosomal RNA

Nearby chains

Chain 2l
30S ribosomal protein S12

Coloring options:


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