3D structure

PDB id
8FC5 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and azithromycin at 2.65A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.65 Å

Loop

Sequence
UUUAGG
Length
6 nucleotides
Bulged bases
8FC5|1|1A|U|827, 8FC5|1|1A|G|830
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8FC5_025 not in the Motif Atlas
Homologous match to HL_7RQB_025
Geometric discrepancy: 0.042
The information below is about HL_7RQB_025
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_53619.1
Basepair signature
cWW-F-F
Number of instances in this motif group
11

Unit IDs

8FC5|1|1A|U|826
8FC5|1|1A|U|827
8FC5|1|1A|U|828
8FC5|1|1A|A|829
8FC5|1|1A|G|830
8FC5|1|1A|G|831

Current chains

Chain 1A
23S Ribosomal RNA

Nearby chains

Chain 1P
50S ribosomal protein L15

Coloring options:


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