HL_8FC5_156

3D structure

PDB id

8FC5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and azithromycin at 2.65A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.65 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

8FC5|1|2A|A|2030, 8FC5|1|2A|A|2031, 8FC5|1|2A|G|2032

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FC5_156 not in the Motif Atlas

Homologous match to HL_7RQB_050

Geometric discrepancy: 0.0352

The information below is about HL_7RQB_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.6

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

6

Unit IDs

8FC5|1|2A|G|2027
8FC5|1|2A|U|2028
8FC5|1|2A|G|2029
8FC5|1|2A|A|2030
8FC5|1|2A|A|2031
8FC5|1|2A|G|2032
8FC5|1|2A|A|2033
8FC5|1|2A|U|2034
8FC5|1|2A|G|2035
8FC5|1|2A|C|2036

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 25

50S ribosomal protein L32

Chain 2E

50S ribosomal protein L3