HL_8FIZ_006

3D structure

PDB id

8FIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of E. coli 70S Ribosome containing mRNA and tRNA (in the transcription-translation complex)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGUAACGGC

Length

9 nucleotides

Bulged bases

8FIZ|1|AA|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FIZ_006 not in the Motif Atlas

Homologous match to HL_5J7L_006

Geometric discrepancy: 0.2027

The information below is about HL_5J7L_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8FIZ|1|AA|G|259
8FIZ|1|AA|G|260
8FIZ|1|AA|U|261
8FIZ|1|AA|A|262
8FIZ|1|AA|A|263
8FIZ|1|AA|C|264
8FIZ|1|AA|G|265
8FIZ|1|AA|G|266
8FIZ|1|AA|C|267

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AB

30S ribosomal protein S20

Chain AS

30S ribosomal protein S17