HL_8FIZ_007

3D structure

PDB id

8FIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of E. coli 70S Ribosome containing mRNA and tRNA (in the transcription-translation complex)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FIZ_007 not in the Motif Atlas

Homologous match to HL_5J7L_007

Geometric discrepancy: 0.136

The information below is about HL_5J7L_007

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

8FIZ|1|AA|U|296
8FIZ|1|AA|G|297
8FIZ|1|AA|A|298
8FIZ|1|AA|G|299
8FIZ|1|AA|A|300
8FIZ|1|AA|G|301

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AC

30S ribosomal protein S12

Chain AI

30S ribosomal protein S4

Chain AP

30S ribosomal protein S5

Chain AS

30S ribosomal protein S17