HL_8FIZ_008

3D structure

PDB id

8FIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of E. coli 70S Ribosome containing mRNA and tRNA (in the transcription-translation complex)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FIZ_008 not in the Motif Atlas

Homologous match to HL_5J7L_008

Geometric discrepancy: 0.1279

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8FIZ|1|AA|A|320
8FIZ|1|AA|A|321
8FIZ|1|AA|C|322
8FIZ|1|AA|U|323
8FIZ|1|AA|G|324
8FIZ|1|AA|A|325
8FIZ|1|AA|G|326
8FIZ|1|AA|A|327
8FIZ|1|AA|C|328
8FIZ|1|AA|A|329
8FIZ|1|AA|C|330
8FIZ|1|AA|G|331
8FIZ|1|AA|G|332
8FIZ|1|AA|U|333

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AB

30S ribosomal protein S20

Chain AO

30S ribosomal protein S16