HL_8FIZ_017
3D structure
- PDB id
- 8FIZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of E. coli 70S Ribosome containing mRNA and tRNA (in the transcription-translation complex)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GAUUAGAUACC
- Length
- 11 nucleotides
- Bulged bases
- 8FIZ|1|AA|A|790, 8FIZ|1|AA|U|793
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8FIZ_017 not in the Motif Atlas
- Homologous match to HL_6CZR_088
- Geometric discrepancy: 0.4593
- The information below is about HL_6CZR_088
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.4
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 13
Unit IDs
8FIZ|1|AA|G|786
8FIZ|1|AA|A|787
8FIZ|1|AA|U|788
8FIZ|1|AA|U|789
8FIZ|1|AA|A|790
8FIZ|1|AA|G|791
8FIZ|1|AA|A|792
8FIZ|1|AA|U|793
8FIZ|1|AA|A|794
8FIZ|1|AA|C|795
8FIZ|1|AA|C|796
Current chains
- Chain AA
- 16S rRNA
Nearby chains
- Chain AM
- 30S ribosomal protein S11
- Chain AW
- mRNA
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
- Chain BB
- Transfer RNA; tRNA
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