HL_8FIZ_040

3D structure

PDB id

8FIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of E. coli 70S Ribosome containing mRNA and tRNA (in the transcription-translation complex)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

8FIZ|1|BA|A|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FIZ_040 not in the Motif Atlas

Homologous match to HL_7A0S_010

Geometric discrepancy: 0.1467

The information below is about HL_7A0S_010

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_01609.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

18

Unit IDs

8FIZ|1|BA|C|305
8FIZ|1|BA|U|306
8FIZ|1|BA|G|307
8FIZ|1|BA|G|308
8FIZ|1|BA|A|309
8FIZ|1|BA|A|310
8FIZ|1|BA|A|311
8FIZ|1|BA|G|312

Current chains

Chain BA

23S rRNA

Nearby chains

Chain DB

50S ribosomal protein L24