HL_8FIZ_048
3D structure
- PDB id
- 8FIZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of E. coli 70S Ribosome containing mRNA and tRNA (in the transcription-translation complex)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UUUUGUAUAA
- Length
- 10 nucleotides
- Bulged bases (A, C, G, U)
- 574A
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8FIZ_048 not in the Motif Atlas
- Geometric match to HL_4WF9_018
- Geometric discrepancy: 0.2327
- The information below is about HL_4WF9_018
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_41998.2
- Basepair signature
- cWW-tWH-F-F-F
- Number of instances in this motif group
- 61
Unit IDs
8FIZ|1|BA|U|566
8FIZ|1|BA|U|567
8FIZ|1|BA|U|568
8FIZ|1|BA|U|569
8FIZ|1|BA|G|570
8FIZ|1|BA|U|571
8FIZ|1|BA|A|572
8FIZ|1|BA|U|573
8FIZ|1|BA|A|574
8FIZ|1|BA|A|575
Current chains
- Chain BA
- 23S rRNA
Nearby chains
- Chain BM
- 50S ribosomal protein L32
- Chain BT
- 50S ribosomal protein L15
- Chain BX
- 50S ribosomal protein L20
- Chain BY
- Ribosomal protein L21
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