HL_8FIZ_066

3D structure

PDB id

8FIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of E. coli 70S Ribosome containing mRNA and tRNA (in the transcription-translation complex)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGACGGUUG

Length

9 nucleotides

Bulged bases

8FIZ|1|BA|A|1453, 8FIZ|1|BA|C|1454

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FIZ_066 not in the Motif Atlas

Homologous match to HL_5J7L_169

Geometric discrepancy: 0.1922

The information below is about HL_5J7L_169

Detailed Annotation

Mini UNCG with extended bulge

Broad Annotation

Mini UNCG with extended bulge

Motif group

HL_22622.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8FIZ|1|BA|C|1451
8FIZ|1|BA|G|1452
8FIZ|1|BA|A|1453
8FIZ|1|BA|C|1454
8FIZ|1|BA|G|1455
8FIZ|1|BA|G|1456
8FIZ|1|BA|U|1457
8FIZ|1|BA|U|1458
8FIZ|1|BA|G|1459

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BV

50S ribosomal protein L17