HL_8FIZ_086

3D structure

PDB id

8FIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of E. coli 70S Ribosome containing mRNA and tRNA (in the transcription-translation complex)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGCAAUGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FIZ_086 not in the Motif Atlas

Homologous match to HL_5J7L_189

Geometric discrepancy: 0.1419

The information below is about HL_5J7L_189

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

24

Unit IDs

8FIZ|1|BA|U|2324
8FIZ|1|BA|G|2325
8FIZ|1|BA|C|2326
8FIZ|1|BA|A|2327
8FIZ|1|BA|A|2328
8FIZ|1|BA|U|2329
8FIZ|1|BA|G|2330
8FIZ|1|BA|G|2331

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BB

Transfer RNA; tRNA

Chain BU

50S ribosomal protein L16

Chain DD

50S ribosomal protein L27