HL_8FIZ_089

3D structure

PDB id

8FIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of E. coli 70S Ribosome containing mRNA and tRNA (in the transcription-translation complex)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGAAUGGAAG

Length

10 nucleotides

Bulged bases

8FIZ|1|BA|A|2406

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FIZ_089 not in the Motif Atlas

Homologous match to HL_5J7L_192

Geometric discrepancy: 0.1033

The information below is about HL_5J7L_192

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53454.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

8FIZ|1|BA|U|2404
8FIZ|1|BA|G|2405
8FIZ|1|BA|A|2406
8FIZ|1|BA|A|2407
8FIZ|1|BA|U|2408
8FIZ|1|BA|G|2409
8FIZ|1|BA|G|2410
8FIZ|1|BA|A|2411
8FIZ|1|BA|A|2412
8FIZ|1|BA|G|2413

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BT

50S ribosomal protein L15