HL_8FIZ_096

3D structure

PDB id

8FIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of E. coli 70S Ribosome containing mRNA and tRNA (in the transcription-translation complex)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

8FIZ|1|BA|G|2751, 8FIZ|1|BA|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FIZ_096 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.1061

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

8FIZ|1|BA|C|2745
8FIZ|1|BA|U|2746
8FIZ|1|BA|G|2747
8FIZ|1|BA|A|2748
8FIZ|1|BA|A|2749
8FIZ|1|BA|A|2750
8FIZ|1|BA|G|2751
8FIZ|1|BA|C|2752
8FIZ|1|BA|A|2753
8FIZ|1|BA|U|2754
8FIZ|1|BA|C|2755
8FIZ|1|BA|U|2756
8FIZ|1|BA|A|2757
8FIZ|1|BA|A|2758
8FIZ|1|BA|G|2759

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BJ

50S ribosomal protein L6

Chain BP

50S ribosomal protein L36

Chain BR

50S ribosomal protein L13