HL_8FIZ_100

3D structure

PDB id

8FIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of E. coli 70S Ribosome containing mRNA and tRNA (in the transcription-translation complex)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GCAGCCGGUAGC

Length

12 nucleotides

Bulged bases

8FIZ|1|BB|C|16, 8FIZ|1|BB|C|17, 8FIZ|1|BB|G|19, 8FIZ|1|BB|G|20, 8FIZ|1|BB|U|21, 8FIZ|1|BB|A|22

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FIZ_100 not in the Motif Atlas

Homologous match to HL_4WT8_234

Geometric discrepancy: 0.4806

The information below is about HL_4WT8_234

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_96927.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8FIZ|1|BB|G|12
8FIZ|1|BB|C|13
8FIZ|1|BB|A|14
8FIZ|1|BB|G|15
8FIZ|1|BB|C|16
8FIZ|1|BB|C|17
8FIZ|1|BB|G|19
8FIZ|1|BB|G|20
8FIZ|1|BB|U|21
8FIZ|1|BB|A|22
8FIZ|1|BB|G|23
8FIZ|1|BB|C|24

Current chains

Chain BB

P-site tRNA

Nearby chains

Chain BA

Large subunit ribosomal RNA; LSU rRNA

Chain BG

50S ribosomal protein L5