HL_8FKP_003

3D structure

PDB id

8FKP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.85 Å

Loop

Sequence

CACUUG

Length

6 nucleotides

Bulged bases

8FKP|1|L1|U|110

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FKP_003 not in the Motif Atlas

Homologous match to HL_5TBW_075

Geometric discrepancy: 0.199

The information below is about HL_5TBW_075

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_22523.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

8FKP|1|L1|C|107
8FKP|1|L1|A|108
8FKP|1|L1|C|109
8FKP|1|L1|U|110
8FKP|1|L1|U|111
8FKP|1|L1|G|112

Current chains

Chain L1

5.8S rRNA

Nearby chains

Chain LW

60S ribosomal protein L37