HL_8FKP_011

3D structure

PDB id

8FKP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.85 Å

Loop

Sequence

CGUGG

Length

5 nucleotides

Bulged bases

8FKP|1|L3|U|224, 8FKP|1|L3|G|225

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FKP_011 not in the Motif Atlas

Homologous match to HL_5TBW_006

Geometric discrepancy: 0.1458

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

8FKP|1|L3|C|222
8FKP|1|L3|G|223
8FKP|1|L3|U|224
8FKP|1|L3|G|225
8FKP|1|L3|G|226

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LI

60S ribosomal protein L26

Chain SA

60S ribosomal protein L4