HL_8FKR_012
3D structure
- PDB id
- 8FKR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human nucleolar pre-60S ribosomal subunit (State B1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.89 Å
Loop
- Sequence
- GUGUGAGGC
- Length
- 9 nucleotides
- Bulged bases
- 8FKR|1|L3|G|232
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8FKR_012 not in the Motif Atlas
- Homologous match to HL_5TBW_007
- Geometric discrepancy: 0.1443
- The information below is about HL_5TBW_007
- Detailed Annotation
- T-loop with unstacked turn
- Broad Annotation
- T-loop
- Motif group
- HL_08002.12
- Basepair signature
- cWW-cWW-F-tWH
- Number of instances in this motif group
- 16
Unit IDs
8FKR|1|L3|G|230
8FKR|1|L3|U|231
8FKR|1|L3|G|232
8FKR|1|L3|U|233
8FKR|1|L3|G|234
8FKR|1|L3|A|235
8FKR|1|L3|G|236
8FKR|1|L3|G|237
8FKR|1|L3|C|238
Current chains
- Chain L3
- 28S rRNA
Nearby chains
- Chain L1
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LI
- 60S ribosomal protein L26
- Chain NM
- Protein MAK16 homolog
- Chain SA
- 60S ribosomal protein L4
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