HL_8FKR_021

3D structure

PDB id

8FKR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State B1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

CCUCAG

Length

6 nucleotides

Bulged bases

8FKR|1|L3|U|1677, 8FKR|1|L3|C|1678, 8FKR|1|L3|A|1679

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FKR_021 not in the Motif Atlas

Homologous match to HL_8C3A_022

Geometric discrepancy: 0.0645

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

8FKR|1|L3|C|1675
8FKR|1|L3|C|1676
8FKR|1|L3|U|1677
8FKR|1|L3|C|1678
8FKR|1|L3|A|1679
8FKR|1|L3|G|1680

Current chains

Chain L3

28S rRNA

Nearby chains

Chain NE

Surfeit locus protein 6

Chain SN

Probable rRNA-processing protein EBP2