HL_8FKS_003

3D structure

PDB id

8FKS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State B2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.88 Å

Loop

Sequence

CACUUG

Length

6 nucleotides

Bulged bases

8FKS|1|L1|U|110

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FKS_003 not in the Motif Atlas

Homologous match to HL_5TBW_075

Geometric discrepancy: 0.189

The information below is about HL_5TBW_075

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_22523.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

8FKS|1|L1|C|107
8FKS|1|L1|A|108
8FKS|1|L1|C|109
8FKS|1|L1|U|110
8FKS|1|L1|U|111
8FKS|1|L1|G|112

Current chains

Chain L1

5.8S rRNA

Nearby chains

Chain LW

60S ribosomal protein L37