HL_8FKS_004

3D structure

PDB id

8FKS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State B2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.88 Å

Loop

Sequence

GUUC

Length

4 nucleotides

Bulged bases

8FKS|1|L1|U|127

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FKS_004 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.1835

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

8FKS|1|L1|G|122
8FKS|1|L1|U|123
8FKS|1|L1|U|127
8FKS|1|L1|C|128

Current chains

Chain L1

5.8S rRNA

Nearby chains

Chain SM

Pescadillo homolog

Chain SS

Ribosome biogenesis protein BOP1