HL_8FKS_021

3D structure

PDB id

8FKS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State B2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.88 Å

Loop

Sequence

CCUCAG

Length

6 nucleotides

Bulged bases

8FKS|1|L3|A|1679

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FKS_021 not in the Motif Atlas

Homologous match to HL_8C3A_022

Geometric discrepancy: 0.1761

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

8FKS|1|L3|C|1675
8FKS|1|L3|C|1676
8FKS|1|L3|U|1677
8FKS|1|L3|C|1678
8FKS|1|L3|A|1679
8FKS|1|L3|G|1680

Current chains

Chain L3

28S rRNA

Nearby chains

Chain NE

Surfeit locus protein 6

Chain SN

Probable rRNA-processing protein EBP2