HL_8FKS_023

3D structure

PDB id

8FKS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State B2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.88 Å

Loop

Sequence

GGUAAGC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FKS_023 not in the Motif Atlas

Geometric match to HL_4V9F_039

Geometric discrepancy: 0.3049

The information below is about HL_4V9F_039

Detailed Annotation

Other HL

Broad Annotation

Other HL

Motif group

HL_67772.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

13

Unit IDs

8FKS|1|L3|G|1864
8FKS|1|L3|G|1865
8FKS|1|L3|U|1866
8FKS|1|L3|A|1867
8FKS|1|L3|A|1868
8FKS|1|L3|G|1869
8FKS|1|L3|C|1870

Current chains

Chain L3

28S rRNA

Nearby chains

Chain NF

Ribosome biogenesis protein NSA2 homolog

Chain SN

Probable rRNA-processing protein EBP2