HL_8FKS_025

3D structure

PDB id

8FKS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State B2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.88 Å

Loop

Sequence

CAUGGAAGUCG

Length

11 nucleotides

Bulged bases

8FKS|1|L3|A|1984

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FKS_025 not in the Motif Atlas

Homologous match to HL_8C3A_027

Geometric discrepancy: 0.2293

The information below is about HL_8C3A_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

8FKS|1|L3|C|1978
8FKS|1|L3|A|1979
8FKS|1|L3|U|1980
8FKS|1|L3|G|1981
8FKS|1|L3|G|1982
8FKS|1|L3|A|1983
8FKS|1|L3|A|1984
8FKS|1|L3|G|1985
8FKS|1|L3|U|1986
8FKS|1|L3|C|1987
8FKS|1|L3|G|1988

Current chains

Chain L3

28S rRNA

Nearby chains

Chain BA

60S ribosomal protein L12

Chain SR

GTP-binding protein 4