HL_8FKS_031

3D structure

PDB id

8FKS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State B2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.88 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

8FKS|1|L3|G|4475

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FKS_031 not in the Motif Atlas

Homologous match to HL_5TBW_062

Geometric discrepancy: 0.2196

The information below is about HL_5TBW_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79150.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

8FKS|1|L3|A|4474
8FKS|1|L3|G|4475
8FKS|1|L3|C|4476
8FKS|1|L3|A|4477
8FKS|1|L3|G|4478
8FKS|1|L3|A|4479
8FKS|1|L3|A|4480
8FKS|1|L3|U|4481

Current chains

Chain L3

28S rRNA

Nearby chains

Chain NF

Ribosome biogenesis protein NSA2 homolog

Chain SG

60S ribosomal protein L9

Chain SR

GTP-binding protein 4