HL_8FKV_018
3D structure
- PDB id
- 8FKV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human nucleolar pre-60S ribosomal subunit (State D1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.47 Å
Loop
- Sequence
- UCUUGAAACA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8FKV_018 not in the Motif Atlas
- Geometric match to HL_5J7L_015
- Geometric discrepancy: 0.3447
- The information below is about HL_5J7L_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.5
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
8FKV|1|L3|U|1317
8FKV|1|L3|C|1318
8FKV|1|L3|U|1319
8FKV|1|L3|U|1320
8FKV|1|L3|G|1321
8FKV|1|L3|A|1322
8FKV|1|L3|A|1323
8FKV|1|L3|A|1324
8FKV|1|L3|C|1325
8FKV|1|L3|A|1326
Current chains
- Chain L3
- 28S rRNA
Nearby chains
- Chain LK
- 60S ribosomal protein L27a
- Chain LQ
- 60S ribosomal protein L32
- Chain SJ
- pre-rRNA 2'-O-ribose RNA methyltransferase FTSJ3
Coloring options: