HL_8FKV_030

3D structure

PDB id

8FKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State D1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

ACGAGAACU

Length

9 nucleotides

Bulged bases

8FKV|1|L3|C|2383

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FKV_030 not in the Motif Atlas

Geometric match to HL_5UD5_002

Geometric discrepancy: 0.3603

The information below is about HL_5UD5_002

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_87306.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8FKV|1|L3|A|2376
8FKV|1|L3|C|2377
8FKV|1|L3|G|2378
8FKV|1|L3|A|2379
8FKV|1|L3|G|2380
8FKV|1|L3|A|2381
8FKV|1|L3|A|2382
8FKV|1|L3|C|2383
8FKV|1|L3|U|2384

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L17