HL_8FKV_033

3D structure

PDB id

8FKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State D1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

CGCAGCAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FKV_033 not in the Motif Atlas

Geometric match to HL_7RQB_019

Geometric discrepancy: 0.2915

The information below is about HL_7RQB_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32369.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

6

Unit IDs

8FKV|1|L3|C|2792
8FKV|1|L3|G|2793
8FKV|1|L3|C|2794
8FKV|1|L3|A|2795
8FKV|1|L3|G|2796
8FKV|1|L3|C|2797
8FKV|1|L3|A|2798
8FKV|1|L3|G|2799

Current chains

Chain L3

28S rRNA

Nearby chains

Chain NI

ATP-dependent RNA helicase DDX54

Chain SJ

pre-rRNA 2'-O-ribose RNA methyltransferase FTSJ3

Chain SU

Nucleolar complex protein 3 homolog