HL_8FKV_039

3D structure

PDB id

8FKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State D1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

8FKV|1|L3|G|4475

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FKV_039 not in the Motif Atlas

Homologous match to HL_5TBW_062

Geometric discrepancy: 0.2289

The information below is about HL_5TBW_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79150.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

8FKV|1|L3|A|4474
8FKV|1|L3|G|4475
8FKV|1|L3|C|4476
8FKV|1|L3|A|4477
8FKV|1|L3|G|4478
8FKV|1|L3|A|4479
8FKV|1|L3|A|4480
8FKV|1|L3|U|4481

Current chains

Chain L3

28S rRNA

Nearby chains

Chain NF

Ribosome biogenesis protein NSA2 homolog

Chain NI

ATP-dependent RNA helicase DDX54

Chain SG

60S ribosomal protein L9

Chain SR

GTP-binding protein 4