HL_8FKV_041

3D structure

PDB id

8FKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State D1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

8FKV|1|L3|G|4543

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FKV_041 not in the Motif Atlas

Geometric match to HL_5TBW_006

Geometric discrepancy: 0.1231

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

8FKV|1|L3|C|4540
8FKV|1|L3|G|4541
8FKV|1|L3|U|4542
8FKV|1|L3|G|4543
8FKV|1|L3|A|4544
8FKV|1|L3|G|4545

Current chains

Chain L3

28S rRNA

Nearby chains

Chain NF

Ribosome biogenesis protein NSA2 homolog

Chain NH

60S ribosome subunit biogenesis protein NIP7 homolog