HL_8FKW_012

3D structure

PDB id

8FKW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State D2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GUGUGAGGC

Length

9 nucleotides

Bulged bases

8FKW|1|L3|G|232

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FKW_012 not in the Motif Atlas

Homologous match to HL_8C3A_007

Geometric discrepancy: 0.4656

The information below is about HL_8C3A_007

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_08002.12

Basepair signature

cWW-cWW-F-tWH

Number of instances in this motif group

16

Unit IDs

8FKW|1|L3|G|230
8FKW|1|L3|U|231
8FKW|1|L3|G|232
8FKW|1|L3|U|233
8FKW|1|L3|G|234
8FKW|1|L3|A|235
8FKW|1|L3|G|236
8FKW|1|L3|G|237
8FKW|1|L3|C|238

Current chains

Chain L3

28S rRNA

Nearby chains

Chain L1

5.8S ribosomal RNA; 5.8S rRNA

Chain LI

60S ribosomal protein L26

Chain SA

60S ribosomal protein L4