HL_8FKW_039
3D structure
- PDB id
- 8FKW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human nucleolar pre-60S ribosomal subunit (State D2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- AGCAGAAU
- Length
- 8 nucleotides
- Bulged bases
- 8FKW|1|L3|G|4475
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8FKW_039 not in the Motif Atlas
- Homologous match to HL_5TBW_062
- Geometric discrepancy: 0.2288
- The information below is about HL_5TBW_062
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_79150.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 12
Unit IDs
8FKW|1|L3|A|4474
8FKW|1|L3|G|4475
8FKW|1|L3|C|4476
8FKW|1|L3|A|4477
8FKW|1|L3|G|4478
8FKW|1|L3|A|4479
8FKW|1|L3|A|4480
8FKW|1|L3|U|4481
Current chains
- Chain L3
- 28S rRNA
Nearby chains
- Chain NF
- Ribosome biogenesis protein NSA2 homolog
- Chain NI
- ATP-dependent RNA helicase DDX54
- Chain SG
- 60S ribosomal protein L9
- Chain SR
- GTP-binding protein 4
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