HL_8FKX_003

3D structure

PDB id

8FKX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

CACUUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FKX_003 not in the Motif Atlas

Geometric match to HL_3DIL_004

Geometric discrepancy: 0.2494

The information below is about HL_3DIL_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78347.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

8

Unit IDs

8FKX|1|L1|C|107
8FKX|1|L1|A|108
8FKX|1|L1|C|109
8FKX|1|L1|U|110
8FKX|1|L1|U|111
8FKX|1|L1|G|112

Current chains

Chain L1

5.8S rRNA

Nearby chains

Chain LW

60S ribosomal protein L37