HL_8FKX_021

3D structure

PDB id

8FKX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FKX_021 not in the Motif Atlas

Geometric match to HL_5J7L_197

Geometric discrepancy: 0.0974

The information below is about HL_5J7L_197

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

8FKX|1|L3|C|1628
8FKX|1|L3|G|1629
8FKX|1|L3|A|1630
8FKX|1|L3|A|1631
8FKX|1|L3|A|1632
8FKX|1|L3|G|1633

Current chains

Chain L3

28S rRNA

Nearby chains

Chain SJ

pre-rRNA 2'-O-ribose RNA methyltransferase FTSJ3

Chain ST

Ribosome biogenesis regulatory protein homolog

Chain SU

Nucleolar complex protein 3 homolog