HL_8FKX_025

3D structure

PDB id

8FKX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

GGAUGAAC

Length

8 nucleotides

Bulged bases

8FKX|1|L3|A|1891, 8FKX|1|L3|A|1892

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FKX_025 not in the Motif Atlas

Homologous match to HL_5TBW_026

Geometric discrepancy: 0.2225

The information below is about HL_5TBW_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_44398.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8FKX|1|L3|G|1886
8FKX|1|L3|G|1887
8FKX|1|L3|A|1888
8FKX|1|L3|U|1889
8FKX|1|L3|G|1890
8FKX|1|L3|A|1891
8FKX|1|L3|A|1892
8FKX|1|L3|C|1893

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LQ

60S ribosomal protein L32

Chain LT

60S ribosomal protein L35a

Chain NB

Guanine nucleotide-binding protein-like 3