HL_8FKX_030

3D structure

PDB id

8FKX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

ACGAGAACU

Length

9 nucleotides

Bulged bases

8FKX|1|L3|C|2383

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FKX_030 not in the Motif Atlas

Geometric match to HL_7A0S_056

Geometric discrepancy: 0.363

The information below is about HL_7A0S_056

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8FKX|1|L3|A|2376
8FKX|1|L3|C|2377
8FKX|1|L3|G|2378
8FKX|1|L3|A|2379
8FKX|1|L3|G|2380
8FKX|1|L3|A|2381
8FKX|1|L3|A|2382
8FKX|1|L3|C|2383
8FKX|1|L3|U|2384

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L17