HL_8FKX_031
3D structure
- PDB id
- 8FKX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human nucleolar pre-60S ribosomal subunit (State E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.59 Å
Loop
- Sequence
- CGAUGGCCUCCGG
- Length
- 13 nucleotides
- Bulged bases
- 8FKX|1|L3|A|2484, 8FKX|1|L3|U|2485, 8FKX|1|L3|U|2490, 8FKX|1|L3|C|2491
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8FKX_031 not in the Motif Atlas
- Geometric match to HL_5TBW_006
- Geometric discrepancy: 0.156
- The information below is about HL_5TBW_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_71121.1
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 24
Unit IDs
8FKX|1|L3|C|2482
8FKX|1|L3|G|2483
8FKX|1|L3|A|2484
8FKX|1|L3|U|2485
8FKX|1|L3|G|2486
8FKX|1|L3|G|2487
8FKX|1|L3|C|2488
8FKX|1|L3|C|2489
8FKX|1|L3|U|2490
8FKX|1|L3|C|2491
8FKX|1|L3|C|2492
8FKX|1|L3|G|2493
8FKX|1|L3|G|2496
Current chains
- Chain L3
- 28S rRNA
Nearby chains
- Chain L1
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain SI
- 60S ribosomal protein L7-like 1
- Chain SM
- Pescadillo homolog
- Chain SS
- Ribosome biogenesis protein BOP1
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