HL_8FKY_027
3D structure
- PDB id
- 8FKY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human nucleolar pre-60S ribosomal subunit (State F)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.67 Å
Loop
- Sequence
- CAUGGAAGUCG
- Length
- 11 nucleotides
- Bulged bases
- 8FKY|1|L3|A|1984
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8FKY_027 not in the Motif Atlas
- Homologous match to HL_8C3A_027
- Geometric discrepancy: 0.2309
- The information below is about HL_8C3A_027
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_19210.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
8FKY|1|L3|C|1978
8FKY|1|L3|A|1979
8FKY|1|L3|U|1980
8FKY|1|L3|G|1981
8FKY|1|L3|G|1982
8FKY|1|L3|A|1983
8FKY|1|L3|A|1984
8FKY|1|L3|G|1985
8FKY|1|L3|U|1986
8FKY|1|L3|C|1987
8FKY|1|L3|G|1988
Current chains
- Chain L3
- 28S rRNA
Nearby chains
- Chain BA
- 60S ribosomal protein L12
- Chain NI
- ATP-dependent RNA helicase DDX54
- Chain SR
- GTP-binding protein 4
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