HL_8FKY_048

3D structure

PDB id

8FKY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State F)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

UGAGGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FKY_048 not in the Motif Atlas

Homologous match to HL_8C3A_067

Geometric discrepancy: 0.1638

The information below is about HL_8C3A_067

Detailed Annotation

Ribsomal LSU H95

Broad Annotation

Ribsomal LSU H95

Motif group

HL_65794.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

11

Unit IDs

8FKY|1|L3|U|4646
8FKY|1|L3|G|4647
8FKY|1|L3|A|4648
8FKY|1|L3|G|4649
8FKY|1|L3|G|4650
8FKY|1|L3|A|4651

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LD

60S ribosomal protein L19