HL_8FKZ_012

3D structure

PDB id

8FKZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State G)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

GUGUGAGGC

Length

9 nucleotides

Bulged bases

8FKZ|1|L3|G|232

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FKZ_012 not in the Motif Atlas

Homologous match to HL_8C3A_007

Geometric discrepancy: 0.4479

The information below is about HL_8C3A_007

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_08002.12

Basepair signature

cWW-cWW-F-tWH

Number of instances in this motif group

16

Unit IDs

8FKZ|1|L3|G|230
8FKZ|1|L3|U|231
8FKZ|1|L3|G|232
8FKZ|1|L3|U|233
8FKZ|1|L3|G|234
8FKZ|1|L3|A|235
8FKZ|1|L3|G|236
8FKZ|1|L3|G|237
8FKZ|1|L3|C|238

Current chains

Chain L3

28S rRNA

Nearby chains

Chain L1

5.8S ribosomal RNA; 5.8S rRNA

Chain LI

60S ribosomal protein L26

Chain SA

60S ribosomal protein L4