HL_8FKZ_025

3D structure

PDB id

8FKZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State G)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

CCUCAG

Length

6 nucleotides

Bulged bases

8FKZ|1|L3|C|1676, 8FKZ|1|L3|U|1677

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FKZ_025 not in the Motif Atlas

Homologous match to HL_8C3A_022

Geometric discrepancy: 0.383

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

8FKZ|1|L3|C|1675
8FKZ|1|L3|C|1676
8FKZ|1|L3|U|1677
8FKZ|1|L3|C|1678
8FKZ|1|L3|A|1679
8FKZ|1|L3|G|1680

Current chains

Chain L3

28S rRNA

Nearby chains