HL_8FL0_014

3D structure

PDB id

8FL0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State H)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.91 Å

Loop

Sequence

CAGAAGGG

Length

8 nucleotides

Bulged bases

8FL0|1|L3|G|4275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FL0_014 not in the Motif Atlas

Geometric match to HL_4WF9_003

Geometric discrepancy: 0.1026

The information below is about HL_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

8FL0|1|L3|C|4270
8FL0|1|L3|A|4271
8FL0|1|L3|G|4272
8FL0|1|L3|A|4273
8FL0|1|L3|A|4274
8FL0|1|L3|G|4275
8FL0|1|L3|G|4276
8FL0|1|L3|G|4277

Current chains

Chain L3

28S rRNA

Nearby chains

Chain ND

Ribosome production factor 2 homolog

Chain SB

60S ribosomal protein L5